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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2154938_2156482_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2154938 - 2156482
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
CAGCACTTACTC
Flanking Amino Acid:
VFRTETDTCEDINECTSNPC
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
61.4
0.28
1
53
33.7
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
45.7
-0.3
1.8
49.68
40.8

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670
ENSAPLT00000031152
2073582 - 2188251
114670