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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2159954_2162840_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2159954 - 2162840
Intron Length:
2887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCGCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GAAAAATCAACC
Flanking Amino Acid:
SGFMMMKNCMDINECEQDPL
Intron Amino Acid Position:
1120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.1
37.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.7
0.6
0.9
69.7
36.7
Minor 5ss
31.4
-2.1
3.6
39.6
45.9
Minor BPS
42.8
-0.5
1.9
49.7
38.9

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670