About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2165252_2165395_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2165252 - 2165395
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TGGTGTTCAAAG
Flanking Amino Acid:
MASLDMKTCIDVNECDLNPN
Intron Amino Acid Position:
1287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
44.4
-0.5
2
49.4
44.3

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037920
2073582 - 2188251
114670
ENSAPLT00000031152
2073582 - 2188251
114670
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670