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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2165989_2166456_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2165989 - 2166456
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
TGTGTCTGAATT
Flanking Amino Acid:
GWLGDGLKCNDLDECATEEH
Intron Amino Acid Position:
1370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
80.5
0.69
0.7
72.5
32.2
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
61.9
0.45
1.5
77.06
39.7

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031152
2073582 - 2188251
114670
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670