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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2172504_2173014_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2172504 - 2173014
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAA
U12 Branch Point Sequence:
TCTCCTCCCACA
Flanking Amino Acid:
SYNNILLICEDIDECSSGEN
Intron Amino Acid Position:
1812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
55.5
0.14
1.2
59
37.9
Major PPT
78.2
0.63
0.7
72.3
25.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
42.8
-0.5
2.1
57.53
42

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031152
2073582 - 2188251
114670
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670