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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2173141_2173655_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2173141 - 2173655
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATGG
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTCTGCTCACTG
Flanking Amino Acid:
YKLSPSGACVGRNECQEIPN
Intron Amino Acid Position:
1854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
63.4
43.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
78.3
0.64
0.9
76.8
37.4
Minor 5ss
36.9
-1.5
3
39.2
46
Minor BPS
45.1
-0.5
2.2
54.83
46.9

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670
ENSAPLT00000031152
2073582 - 2188251
114670