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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2177649_2178761_F

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2177649 - 2178761
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
TTCTGCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
AAGTCATGATCT
Flanking Amino Acid:
FEPGPMMTCEDINECALNPL
Intron Amino Acid Position:
2215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
77.8
0.63
0.8
69.3
36.9
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
47.6
-0.1
2
66.21
43.6

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031152
2073582 - 2188251
114670
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670