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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2180001_2180464_F

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2180001 - 2180464
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATTACC
5'SS Class:
major
3'SS Sequence:
TCTCTCTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
ACATCCTGAACT
Flanking Amino Acid:
EVSPSGTECIDTRQGFCFTE
Intron Amino Acid Position:
2342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72
37.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
80.8
0.69
0.8
73.4
36.1
Minor 5ss
37.6
-1.4
2.7
48.2
40.3
Minor BPS
71.6
0.76
1.4
80.59
40.7

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031152
2073582 - 2188251
114670
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670