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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2181044_2182224_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2181044 - 2182224
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TGTCTCTCAAAT
Flanking Amino Acid:
TADITGTACVDLDECNQSPK
Intron Amino Acid Position:
2453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
70.5
0.46
1
67.2
37.2
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
57.9
0.33
1.7
76.04
39.8

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670
ENSAPLT00000031152
2073582 - 2188251
114670