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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2184684_2185903_F

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2184684 - 2185903
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAG
U12 Branch Point Sequence:
TCTTCTGTCACC
Flanking Amino Acid:
CPGGYFRAGQGHCISGLGFG
Intron Amino Acid Position:
2693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66
40.1
Major BPS
58.6
0.21
1.5
57.1
41.8
Major PPT
73.4
0.53
0.9
66.4
39.5
Minor 5ss
29.3
-2.4
3.3
30
43
Minor BPS
49.6
-0
2.4
69.26
43

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670
ENSAPLT00000031152
2073582 - 2188251
114670