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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2186073_2186832_F

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2186073 - 2186832
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
GTATCTGTAACA
Flanking Amino Acid:
RSINGTERHQDHAVNLASMD
Intron Amino Acid Position:
2750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
70.2
0.46
0.8
64.6
31
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
60.5
0.33
2
72.84
39

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031152
2073582 - 2188251
114670
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670