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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2239542_2242172_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2239542 - 2242172
Intron Length:
2631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTGACCATAACG
Flanking Amino Acid:
QKGEVVEGDPDKVLRMLYVW
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
34.9
-1.7
3.3
50
46.3
Minor BPS
56.9
0.08
1.8
62.34
44.8

Associated Gene:

Gene:
TIMM44
Ensembl Gene ID:
ENSAPLG00000009557
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009973
2239422 - 2257354
17933