About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2246250_2248462_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2246250 - 2248462
Intron Length:
2213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTCCTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTTCCTTCATT
Flanking Amino Acid:
EILKDWCYEATYSQLAHPIQ
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.3
0.64
0.8
77.9
29.8
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
73.9
0.83
1.7
88.65
36.5

Associated Gene:

Gene:
TIMM44
Ensembl Gene ID:
ENSAPLG00000009557
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009973
2239422 - 2257354
17933