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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2250264_2250581_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2250264 - 2250581
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCTCTCTGAATT
Flanking Amino Acid:
AVTDKVTDLIGGLFSKTEMS
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
69.8
0.49
1
61
37.5
Major PPT
76.3
0.59
1
75.2
39
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
64.5
0.53
1.4
77.82
38.8

Associated Gene:

Gene:
TIMM44
Ensembl Gene ID:
ENSAPLG00000009557
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009973
2239422 - 2257354
17933