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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2251761_2252260_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2251761 - 2252260
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
CTGAACTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATCTTCTGAACT
Flanking Amino Acid:
IKEERVFEANEEAMGMVLHK
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
77.2
37.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
67.9
0.4
0.9
58.3
42.7
Minor 5ss
49
-0.1
2.5
65
40.2
Minor BPS
71.1
0.74
1.4
82.91
38.1

Associated Gene:

Gene:
TIMM44
Ensembl Gene ID:
ENSAPLG00000009557
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009973
2239422 - 2257354
17933