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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2259462_2260727_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2259462 - 2260727
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TAGATTAAACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
ACCTCCTAGATT
Flanking Amino Acid:
RKACQIFVRNNLSFSFEGHV
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.3
36.2
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
48.3
-0
1.2
44.2
44.7
Minor 5ss
33.1
-1.9
2.8
41.4
38.2
Minor BPS
55.9
0.27
1.7
68.51
43.2

Associated Gene:

Gene:
HNRNPM
Ensembl Gene ID:
ENSAPLG00000010149
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010584
2259276 - 2281563
22288