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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2261510_2262115_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2261510 - 2262115
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAAATT
Flanking Amino Acid:
SFGDTLERGIGGGNASIPGI
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
80.7
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.7
0.78
0.9
76.9
42.1
Minor 5ss
31.4
-2.1
2.4
35.4
40.5
Minor BPS
56.5
0.28
1.9
77.76
38.8

Associated Gene:

Gene:
HNRNPM
Ensembl Gene ID:
ENSAPLG00000010149
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029260
2259276 - 2272166
12891
ENSAPLT00000010584
2259276 - 2281563
22288
ENSAPLT00000034212
2259276 - 2272166
12891