Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2263208_2263792_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2263208 - 2263792

Intron Length:

585

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTATTTTGAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTCTCTTTTATT

Flanking Amino Acid:

GMGMGNMGPGGMGMEGMGFG

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.8

33.7

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

68.5

0.42

1.7

81.1

35.5

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

68.7

0.67

1.6

83.34

38.2

Associated Gene:

Gene:

HNRNPM

Ensembl Gene ID:

ENSAPLG00000010149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029260

2259276 - 2272166

12891