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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2266223_2266637_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2266223 - 2266637
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
AAATTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ACAAACTTAATG
Flanking Amino Acid:
LFDRPMHVKMDERAFPKGDF
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
77.1
37.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
70.9
0.47
1
67.6
42.7
Minor 5ss
36.2
-1.6
2.6
40.8
39.1
Minor BPS
51.8
-0
1.6
52.58
41.9

Associated Gene:

Gene:
HNRNPM
Ensembl Gene ID:
ENSAPLG00000010149
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034212
2259276 - 2272166
12891
ENSAPLT00000029260
2259276 - 2272166
12891
ENSAPLT00000010584
2259276 - 2281563
22288