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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2267708_2268705_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2267708 - 2268705
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCGTT
5'SS Class:
major
3'SS Sequence:
ACTTATCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTACTTATCT
Flanking Amino Acid:
RLGSTVFVANLDYKVGWKKL
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
78.2
36.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.5
0.66
0.9
70
40.5
Minor 5ss
44.7
-0.6
3.5
69
41.9
Minor BPS
68.6
0.66
1.8
86.62
38.7

Associated Gene:

Gene:
HNRNPM
Ensembl Gene ID:
ENSAPLG00000010149
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034212
2259276 - 2272166
12891
ENSAPLT00000029260
2259276 - 2272166
12891
ENSAPLT00000010584
2259276 - 2281563
22288