Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2271193_2272120_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2271193 - 2272120

Intron Length:

928

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTCAAGGGT

5'SS Class:

weak_major

3'SS Sequence:

TGTATCTTCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTAGAT

U12 Branch Point Sequence:

TGTATCTTCACA

Flanking Amino Acid:

YVELLMDAEGNVVEFKMEES

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.9

0.12

1.3

54.8

42.7

Major BPS

66.8

0.42

1.1

64.4

41.8

Major PPT

78.5

0.64

0.9

72.4

37.7

Minor 5ss

27.4

-2.6

3.6

37.9

41.4

Minor BPS

60.4

0.32

1.8

72.48

39.3

Associated Gene:

Gene:

HNRNPM

Ensembl Gene ID:

ENSAPLG00000010149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010584

2259276 - 2281563

22288