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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2272167_2279105_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2272167 - 2279105
Intron Length:
6939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGATTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCGTCTGGAATC
Flanking Amino Acid:
QSLKDLVKEKVGEVTYVELL
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
72.8
0.51
0.9
66.5
39.1
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
47
-0.2
2.1
58.21
41.7

Associated Gene:

Gene:
HNRNPM
Ensembl Gene ID:
ENSAPLG00000010149
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010584
2259276 - 2281563
22288