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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_22773_23044_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22773 - 23044
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAACATTTAAAT
Flanking Amino Acid:
EHVQIPDCVLQYEEERIKAR
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.8
0.67
0.9
73.9
35.4
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
55
0.23
1.6
70.43
39.5

Associated Gene:

Gene:
ATCAY
Ensembl Gene ID:
ENSAPLG00000004775
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004927
17024 - 31995
14972