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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2305784_2306183_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2305784 - 2306183
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
TCCCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAC
U12 Branch Point Sequence:
AGCTGCTTGACA
Flanking Amino Acid:
VAGFQWATKEGVLCEENMRG
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
56.2
0.15
1.3
51
44.3
Major PPT
80.9
0.7
0.7
72.7
32.1
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
57.6
0.23
1.8
65.32
41.1

Associated Gene:

Gene:
EEF2
Ensembl Gene ID:
ENSAPLG00000010503
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010983
2305153 - 2313090
7938