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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2307700_2307958_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2307700 - 2307958
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TCATCCTTCAAA
Flanking Amino Acid:
KEDLYLKPIQRTILMMGRYV
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1.3
75.3
40.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
89.6
0.89
0.6
88.3
21.5
Minor 5ss
32.3
-2
2.8
43.1
43.7
Minor BPS
59
0.28
1.9
69.43
42.6

Associated Gene:

Gene:
EEF2
Ensembl Gene ID:
ENSAPLG00000010503
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010983
2305153 - 2313090
7938