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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2308721_2308925_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2308721 - 2308925
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ACACCTCTAATC
Flanking Amino Acid:
KDKEGKPLLKAVMRRWLPAG
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
75.6
36.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
71.4
0.48
0.9
65.5
35.4
Minor 5ss
34.9
-1.7
3.4
45.9
49.3
Minor BPS
49
-0
1.6
55.7
36.5

Associated Gene:

Gene:
EEF2
Ensembl Gene ID:
ENSAPLG00000010503
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010983
2305153 - 2313090
7938