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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2309040_2309354_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2309040 - 2309354
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GCTGCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
CATTCACGAATG
Flanking Amino Acid:
CQLILDPIFKVFDAIMSFKK
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
80.1
28.5
Major BPS
69.9
0.5
1
73
31.5
Major PPT
69
0.43
1
65.3
41.1
Minor 5ss
45.4
-0.5
2.7
60.6
44.5
Minor BPS
44.3
-0.5
2
51.71
42.4

Associated Gene:

Gene:
EEF2
Ensembl Gene ID:
ENSAPLG00000010503
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010983
2305153 - 2313090
7938