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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2309461_2309841_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2309461 - 2309841
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TCTGGCATAATT
Flanking Amino Acid:
EDMMKKLWGDRYFDPATGKF
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
76.2
0.65
1
67
39.8
Major PPT
85.6
0.8
0.8
77.7
36
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
49.4
0.03
2.1
72.18
45.2

Associated Gene:

Gene:
EEF2
Ensembl Gene ID:
ENSAPLG00000010503
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010983
2305153 - 2313090
7938