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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2310021_2310817_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2310021 - 2310817
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TCCTCTGTAACC
Flanking Amino Acid:
GESGPMGNIMIDPVLGTVGF
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
84.2
0.77
0.8
81
36.6
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
58.6
0.25
2
69.26
43

Associated Gene:

Gene:
EEF2
Ensembl Gene ID:
ENSAPLG00000010503
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010983
2305153 - 2313090
7938