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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2312103_2312835_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2312103 - 2312835
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTCCTTCAAG
Flanking Amino Acid:
SQNPPPSAIMVNFTVDQIRA
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.1
0.61
1
75.7
33.2
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
60.7
0.19
2
68.4
44.9

Associated Gene:

Gene:
EEF2
Ensembl Gene ID:
ENSAPLG00000010503
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010983
2305153 - 2313090
7938