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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2325353_2327039_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2325353 - 2327039
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTCTC
5'SS Class:
major
3'SS Sequence:
CTTAATTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCTTCCTTAATT
Flanking Amino Acid:
PRQVELIRNSRELQPGVKSV
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
69.2
41.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
69.6
0.44
1
63
42.6
Minor 5ss
37.8
-1.4
3.2
53.5
43.6
Minor BPS
89.6
1.32
0.9
95.75
31

Associated Gene:

Gene:
PIAS4
Ensembl Gene ID:
ENSAPLG00000010840
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011326
2319763 - 2335713
15951