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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2327082_2327482_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2327082 - 2327482
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAG
U12 Branch Point Sequence:
GGATGCTAAGCG
Flanking Amino Acid:
PGVKSVQVVLRICYTDTSAP
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
55.4
0.13
1.6
63.6
42.5
Major PPT
88.7
0.87
0.7
83.8
24.3
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
41.9
-0.7
2.2
45.82
46.1

Associated Gene:

Gene:
PIAS4
Ensembl Gene ID:
ENSAPLG00000010840
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011326
2319763 - 2335713
15951