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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2334965_2335303_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2334965 - 2335303
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GGGGTCTTAATT
Flanking Amino Acid:
CSPQCPILVLGSSDVNGLLP
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.7
34.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
72.6
0.51
0.8
69.1
31.4
Minor 5ss
35.5
-1.7
3.5
49.2
47.3
Minor BPS
61
0.42
1.4
68.66
42.7

Associated Gene:

Gene:
PIAS4
Ensembl Gene ID:
ENSAPLG00000010840
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011326
2319763 - 2335713
15951