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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2342025_2343161_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2342025 - 2343161
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACTTTGATT
Flanking Amino Acid:
LDELAEKLKRRMREASSRPR
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.2
0.77
0.7
76.2
32.4
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
67.7
0.64
1.2
79.23
37.5

Associated Gene:

Gene:
SH3GL1
Ensembl Gene ID:
ENSAPLG00000002520
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034094
2337775 - 2348456
10682
ENSAPLT00000026580
2337775 - 2348456
10682
ENSAPLT00000002576
2339932 - 2358550
18619