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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2343266_2343829_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2343266 - 2343829
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
GTGGTTCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
GAGCCATTCACC
Flanking Amino Acid:
TSMHNLLETDIEQVSQLSAL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
71.1
34.7
Major BPS
69.9
0.5
1
73
31.5
Major PPT
71.9
0.49
1
65.5
41
Minor 5ss
28.9
-2.4
3
31.7
35.3
Minor BPS
46.6
-0.2
2
55.4
42

Associated Gene:

Gene:
SH3GL1
Ensembl Gene ID:
ENSAPLG00000002520
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034094
2337775 - 2348456
10682
ENSAPLT00000026580
2337775 - 2348456
10682
ENSAPLT00000002576
2339932 - 2358550
18619