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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_234822_237152_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
234822 - 237152
Intron Length:
2331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTCTA
5'SS Class:
major
3'SS Sequence:
TTCTGCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGCTAATTACTT
Flanking Amino Acid:
LDDALVNSSARVVEVYNTET
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
71.8
39.4
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
83.1
0.75
0.8
77
31.7
Minor 5ss
40.2
-1.1
2.7
50.6
45.7
Minor BPS
47.2
-0.1
2
66.74
43.9

Associated Gene:

Gene:
ACSBG2
Ensembl Gene ID:
ENSAPLG00000004090
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042813
234317 - 247253
12937
ENSAPLT00000038705
230609 - 247253
16645
ENSAPLT00000004245
226475 - 247253
20779