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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2348241_2348351_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2348241 - 2348351
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTGATCTTCACT
Flanking Amino Acid:
SLGCFREMEKKVDLTSKAVT
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.8
0.76
0.8
77.4
31.5
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
55.3
0.25
1.9
71.66
45.5

Associated Gene:

Gene:
SH3GL1
Ensembl Gene ID:
ENSAPLG00000002520
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026580
2337775 - 2348456
10682
ENSAPLT00000002576
2339932 - 2358550
18619
ENSAPLT00000034094
2337775 - 2348456
10682