Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2371049_2371132_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2371049 - 2371132

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGAGCTT

5'SS Class:

major

3'SS Sequence:

TTTGTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTAAA

U12 Branch Point Sequence:

ATCTCTAAAACT

Flanking Amino Acid:

IGRNKGSIMQVPQKFPKSSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.3

0.41

1.1

62.8

43.2

Major BPS

0.57

73.6

28.6

Major PPT

0.83

0.8

84.6

Minor 5ss

29.2

-2.4

3.7

46.2

49.1

Minor BPS

53.3

0.18

1.9

74.84

42.2

Associated Gene:

Gene:

CHAF1A

Ensembl Gene ID:

ENSAPLG00000008289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042335

2371001 - 2382197

11197

ENSAPLT00000008641

2371001 - 2380868

9868