Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2371190_2373283_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2371190 - 2373283

Intron Length:

2094

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGGCCT

5'SS Class:

major

3'SS Sequence:

CTTTCTGCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTAAT

U12 Branch Point Sequence:

TCTTTCTGCACT

Flanking Amino Acid:

AEKEKLRLQRDQERADKLQK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

60.7

43.9

Major BPS

69.2

0.48

1.3

71.9

Major PPT

69.2

0.43

0.9

63.2

38.3

Minor 5ss

34.7

-1.7

3.4

45.5

43.2

Minor BPS

59.1

0.37

1.9

80.07

42.1

Associated Gene:

Gene:

CHAF1A

Ensembl Gene ID:

ENSAPLG00000008289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042335

2371001 - 2382197

11197

ENSAPLT00000008641

2371001 - 2380868

9868