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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_23718_24114_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23718 - 24114
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
GACTTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TGTCCCATGACT
Flanking Amino Acid:
LKKCYQMIDRRLRKNLKALI
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
74.5
0.55
0.9
68.4
37.1
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
65.7
0.58
1.6
83.32
36.9

Associated Gene:

Gene:
ATCAY
Ensembl Gene ID:
ENSAPLG00000004775
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004927
17024 - 31995
14972