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Intron Name: Anas_platyrhynchos_platyrhynchos_29_2373526_2374119_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2373526 - 2374119

Intron Length:

594

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTGGC

5'SS Class:

major

3'SS Sequence:

TTTTATATTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TTGAAATGAATT

Flanking Amino Acid:

EKRKERQEALEAKLEEKRKK

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

1.1

40.7

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

76.6

0.6

1.1

80.7

35.6

Minor 5ss

34.3

-1.8

3.2

40.1

Minor BPS

47.3

-0.1

1.9

68.26

42.1

Associated Gene:

Gene:

CHAF1A

Ensembl Gene ID:

ENSAPLG00000008289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042335

2371001 - 2382197

11197

ENSAPLT00000008641

2371001 - 2380868

9868