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Intron Name: Anas_platyrhynchos_platyrhynchos_29_2375422_2375967_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2375422 - 2375967

Intron Length:

546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTTTAACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

TTTGCTTTAACA

Flanking Amino Acid:

FVNNSTDIVNSDVVVVANCK

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

1.1

73.9

42.7

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

0.7

0.9

77.2

35.8

Minor 5ss

34.2

-1.8

2.8

41.7

44.8

Minor BPS

81.5

0.98

1.2

86.93

31.8

Associated Gene:

Gene:

CHAF1A

Ensembl Gene ID:

ENSAPLG00000008289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042335

2371001 - 2382197

11197

ENSAPLT00000008641

2371001 - 2380868

9868