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Intron Name: Anas_platyrhynchos_platyrhynchos_29_2376414_2376500_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2376414 - 2376500

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

AGTTTATTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

GGCTTCTAAAAA

Flanking Amino Acid:

PGESLSHSEGDDEEEGEDED

Intron Amino Acid Position:

318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

79.5

36.8

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

77.6

0.62

0.9

74.9

39.5

Minor 5ss

42.2

-0.9

3.4

56.2

Minor BPS

49.3

-0

1.8

57.56

41.7

Associated Gene:

Gene:

CHAF1A

Ensembl Gene ID:

ENSAPLG00000008289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042335

2371001 - 2382197

11197

ENSAPLT00000008641

2371001 - 2380868

9868