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Intron Name: Anas_platyrhynchos_platyrhynchos_29_2376591_2376779_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2376591 - 2376779

Intron Length:

189

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CCTGTGGCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAA

U12 Branch Point Sequence:

TCTTTCTCACCT

Flanking Amino Acid:

YLSEDEGVTEECDPENQKVR

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

75.1

35.1

Major BPS

0.72

80.3

31.7

Major PPT

65.5

0.35

61.6

40.1

Minor 5ss

33.7

-1.9

3.2

40.4

Minor BPS

59.7

0.38

1.9

79.4

Associated Gene:

Gene:

CHAF1A

Ensembl Gene ID:

ENSAPLG00000008289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042335

2371001 - 2382197

11197

ENSAPLT00000008641

2371001 - 2380868

9868