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Intron Name: Anas_platyrhynchos_platyrhynchos_29_2377042_2377634_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2377042 - 2377634

Intron Length:

593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGACAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAG

U12 Branch Point Sequence:

TTCCCCACAACC

Flanking Amino Acid:

CSKKRAKDQQILGQLLPLLH

Intron Amino Acid Position:

435

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

74.4

35.9

Major BPS

60.1

0.25

1.6

60.7

45.9

Major PPT

89.9

0.9

0.6

84.8

22.8

Minor 5ss

35.3

-1.7

3.3

48.7

41.3

Minor BPS

54.2

0.11

1.9

69.72

41.3

Associated Gene:

Gene:

CHAF1A

Ensembl Gene ID:

ENSAPLG00000008289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042335

2371001 - 2382197

11197

ENSAPLT00000008641

2371001 - 2380868

9868