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Intron Name: Anas_platyrhynchos_platyrhynchos_29_2378123_2380424_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2378123 - 2380424

Intron Length:

2302

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

ATACCTTTATTT

Flanking Amino Acid:

FMKRPRGAEQAEAMDMDGFQ

Intron Amino Acid Position:

598

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.2

38.5

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

91.4

0.93

0.6

85.5

29.2

Minor 5ss

38.8

-1.3

50.2

46.4

Minor BPS

58.4

0.34

1.5

72.65

38.4

Associated Gene:

Gene:

CHAF1A

Ensembl Gene ID:

ENSAPLG00000008289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042335

2371001 - 2382197

11197

ENSAPLT00000008641

2371001 - 2380868

9868