About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_237932_239489_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
237932 - 239489
Intron Length:
1558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTGCTGTAATC
Flanking Amino Acid:
CCKAAKSFLKLGLERFHGVC
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
52.6
0.06
2.1
67.85
38.7

Associated Gene:

Gene:
ACSBG2
Ensembl Gene ID:
ENSAPLG00000004090
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042813
234317 - 247253
12937
ENSAPLT00000038705
230609 - 247253
16645
ENSAPLT00000004245
226475 - 247253
20779