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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_239579_240124_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
239579 - 240124
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTCTTTTGTA
Flanking Amino Acid:
FIADIGAIFAGGLAVGIYTT
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.6
40.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
45.3
-0.3
3.5
74.68
37.8

Associated Gene:

Gene:
ACSBG2
Ensembl Gene ID:
ENSAPLG00000004090
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038705
230609 - 247253
16645
ENSAPLT00000004245
226475 - 247253
20779
ENSAPLT00000042813
234317 - 247253
12937