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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2408378_2408537_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2408378 - 2408537
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCGA
5'SS Class:
major
3'SS Sequence:
CCCTGGTGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAGAG
U12 Branch Point Sequence:
AGCTGCAGAGCG
Flanking Amino Acid:
GGGKDLVPPEPAGPPRRHPG
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65
42.7
Major BPS
44.1
-0.3
1.5
40.4
42.3
Major PPT
65.7
0.35
1
56.2
43.5
Minor 5ss
26.7
-2.7
2.9
32.1
42.4
Minor BPS
37.4
-1.1
2.1
40.59
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007778
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008076
2407751 - 2410118
2368