About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2409391_2409484_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2409391 - 2409484
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
CCCATTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
CCCCCCCCATTC
Flanking Amino Acid:
LPILQQPTEKLISDTKQLVT
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
73
0.52
0.8
64.3
36.5
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
38.3
-0.9
1.9
40.2
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007778
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008076
2407751 - 2410118
2368